Using Bioinformatics Tools for Identification and Characterization of Transcriptome Derived EST-SSRs in Silver Fir (Abies alba Mill.)
Abstract
Bioinformatics tools have been used to evaluate silver fir de novo assembled 454 transcriptome. A total of 3500 EST-SSRs were detected in the 454 transcriptome of silver fir. Most abundant are tri-nucleotide SSRs being followed by tetra- SSRs and di- SSRs. In addition, we determined the density, frequency, average length and average repeat number of EST-SSRs in the 454 transcriptome of silver fir.
Authors who publish with this journal agree to the following terms:
a) Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
b) Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
c) Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).